rs26960859 SNP Detail

Summary

• ID
  rs26960859
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:57398520 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGACAGCG TAGAAGTCCG
  ATTCATCAGG CCCTTGGTTC TTTTAAATCC AGGGTCCCCT TCTGCTATGA CATCCATTGT
  CTTCTTCCCA ATGAATTCCA AGGCATCCAA GCCCCCACTG ATAACGCTCT TGCCCTAGGA
  AAGCCGAAAA ATTCCATTAA AACAGATTTC CACAAAATTC CATTACAACT AATTGACGAC
  M
  CAGGAATGGC TACATAGTGT GGAGCTGCTG ATGCAGGCCT GCAGTTCTAG CTACTCGGGA
  GGCTGAGGGA GGAGAACGTT CAAGTATGGC AAAGGCACAT CCAGGAAACT CCAGGCCTGT
  TTGAGCAAAT GGTAAGGTGA AAGGCAGTGG GATGTACTGC TAGTTTAGTG GCAGTGTATT
  TGTCTGGCAT GTGTGAGGCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
ss37198993	NES08426602	PERLEGEN	MM_PANEL2	f	SNP	A	A	C	A	A	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
rs26960859					SNP	A	A	C	A	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37198993	NES08426602	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:57398520 () rs orientation: forward

Symbol	Name	Function Class
Fam114a2	family with sequence similarity 114, member A2	within coordinates
Tssr108113	transcription start site region 108113	642 bp upstream
Tssr108114	transcription start site region 108114	588 bp upstream
Tssr108115	transcription start site region 108115	579 bp upstream
Tssr108116	transcription start site region 108116	560 bp upstream