rs26960862 SNP Detail

Summary

• ID
  rs26960862
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:57397112 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAACA ACAAAACGTC CTGAGCCAAC
  R
  ATTTGCAAAC AGCTAACTGT ATGCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
ss37198996	NES08426603	PERLEGEN	MM_PANEL2	f	SNP	G		G	A	A		G		A	A		A
ss132170443	ENSMUSSNP262044	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G			G
ss323682971	CHEV_11_57319788	CHEVERUD	SCREENING_POP	f	SNP								A			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
rs26960862					SNP	G	G	G	A	A	G	G	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37198996	NES08426603	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:57397112 () rs orientation: forward

Symbol	Name	Function Class
Fam114a2	family with sequence similarity 114, member A2	within coordinates
Tssr108113	transcription start site region 108113	755 bp downstream
Tssr108114	transcription start site region 108114	816 bp downstream
Tssr108115	transcription start site region 108115	824 bp downstream
Tssr108116	transcription start site region 108116	843 bp downstream