rs26961598 SNP Detail

Summary

• ID
  rs26961598
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:55680566 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCTGGGAT TACAGATGTG
  TTCCACCAGG CTCAGCTTTT CATGTGACTG CTGGGCATTT GAACCCAGGT CTTAATGCTT
  GCCCAGCAAA TACTTTACTG CCCAAGCCAC CTTCTCACCC CAGAATGCAC CTTTCAAGCA
  TGGTTGGATA TCTACAGGGG TAAACAAATG TGACTATTTT CTCCATCGCT ATTCCAATAT
  Y
  TTGGTTCTTT CCAGGTCTGC TGAGAAACCA CACAAGCACA ATAGAGGTGG GAGGCTGTCT
  GATGCCAGCC TGCCAGAATC ACAGGCTCTT TAAACAGCAG AGGAGTGGAA GTGGGTGCCC
  TCTTGTGGAC ACTAGAGAAT CCACAGTGAT ACTCTTGGGA CCCTCACCCA AGGGTTTCCA
  GGCCTTGAGG CCAGAGATGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37203821	NES08438561	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26961598					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37203821	NES08438561	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:55680566 () rs orientation: forward

Symbol	Name	Function Class
D11Mit349	DNA Segment, Chr 11 Massachusetts Institute of Technology 349	275 bp distal
Gm50502	predicted gene, 50502	within coordinates
Rr447615	regulatory region 447615	within coordinates
Rr447616	regulatory region 447616	112 bp proximal
Rr447617	regulatory region 447617	1043 bp proximal
Rr447618	regulatory region 447618	1575 bp proximal