rs26965739 SNP Detail

Summary

• ID
  rs26965739
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:85630690 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGAGAGGA GGAAGAGGGG
  GAGGCCTGCA CCTAACCATC TTGGAACAGT TGCTCAGAGC AGCATTTAGT GTTTTATTAG
  GAGAGAACAA GTCTATAAAA GGAACAAGAG GTTCAATCAT TACAGAGTGG GCGACAGGAG
  GCAGCTGCCA GGATGACTTT GAAACCCTTT GCGATCCTAG AAGAGTTGCC ACAAGTAACA
  Y
  ACTGCAGCTG CTGGGATCCT TCAGTGGAGA CGCAGAACTT GGCACCCACT CCTGCAGCAG
  TGGGACTCTA GGGTCACCAG TGTTTTCTTT AGATAAGTTC CTACCCTGCT CTCACTGCGG
  TTCCTGTATT CATTCTCTTT TGTTTTCAGG TAGGTTTGAG AGAATTAGAA GCGGACAGCC
  CCCTAGTGTG ATTTAAAGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37231766	NES08591841	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26965739					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37231766	NES08591841	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:85630690 () rs orientation: forward

Symbol	Name	Function Class
Bcas3	BCAS3 microtubule associated cell migration factor	within coordinates
Rr453430	regulatory region 453430	within coordinates
Tssr103842	transcription start site region 103842	17 bp upstream
Tssr103843	transcription start site region 103843	42 bp upstream
Tssr103844	transcription start site region 103844	67 bp upstream
Tssr103845	transcription start site region 103845	84 bp upstream