rs26971136 SNP Detail

Summary

• ID
  rs26971136
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:59840693 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACACTGTTA ACTTCCTATT
  TAATATGAGA CCCTGTCTCT AGGCAACAAG GCGAAGCGCT ACAGTATAAT ACATCCATAA
  ACTAGTGACA TCATTATTTA TTATCATTAT CAAGCATTAA GAACTACCTG TAATTGTATA
  GGTAATACTT TTTATCCATC AGGCAGTATA CTTTTTTTTT TTTCACACTC TTGTGAGTGG
  Y
  GCATTCTGCT GCAACATTAC CACAACTACT TTGTCATTAG GCAAAGGAAG GTTTTGGTTA
  CATTATAAGC ATTAGACAGT TACTGAATAT ATGATCTGGC ATTAATCAGG TTATTTAGCA
  CATACCTGTA TAGCCACAGG ACACTAGGTG CAAACCTCTG AATTTCTTCT AAACCATTAG
  ATACTAAAAG TAAATTAAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37194069	NES08424096	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C		C	C	T	C		C
ss323699690	CHEV_11_59763369	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs26971136					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37194069	NES08424096	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:59840693 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2971	CpG island 2971	1187 bp distal
Med9	mediator complex subunit 9	within coordinates
Med9os	mediator complex subunit 9, opposite strand	1720 bp upstream
Rr448290	regulatory region 448290	1733 bp distal
Rr448291	regulatory region 448291	1153 bp distal
Tssr101871	transcription start site region 101871	1606 bp downstream
Tssr108257	transcription start site region 108257	1766 bp upstream
Tssr108258	transcription start site region 108258	1704 bp upstream
Tssr108259	transcription start site region 108259	1686 bp upstream