rs26971138 SNP Detail

Summary

• ID
  rs26971138
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:59839695 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTGTCCCA TCCCAGATCC
  TGCAGTGACT TGGGGATGGG TCTTAAGTCC TTACACATAG CCCGAAGGCA ATTTTATACA
  GTTGTTTTAA TTCGCCTGCG TTTTGACTGT TCGCATGAAG CCCAGAGCGG AATTTCTCAC
  TTGTGGCATT ATATGAGCCC CGAAAAGTGT TCGAATTTTG GTGGACCTCA GACGTTCAGA
  Y
  TCGAGATTCT CACCGTGTAC ACAGTTTAGT ACCCATTTCA ATGCGAGGCA TCTTACCTGT
  GTGGGCTCTG TTAGGTACTA GGGTTGTACA CCGTAAAGAA AGGAGCAGCC ATTTACCCTT
  ACAGGGCTTA ACGGTTACAA GCAAAGAAAA ACAAACAAAC ATTCTTAAAA GTGGAGAGAT
  GGCGCACACC TTTAATCCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37194071	NES08424114	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26971138					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37194071	NES08424114	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:59839695 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2971	CpG island 2971	189 bp distal
Med9	mediator complex subunit 9	within coordinates
Med9os	mediator complex subunit 9, opposite strand	722 bp upstream
Rr448290	regulatory region 448290	735 bp distal
Rr448291	regulatory region 448291	155 bp distal
Tssr101871	transcription start site region 101871	608 bp downstream
Tssr108257	transcription start site region 108257	768 bp upstream
Tssr108258	transcription start site region 108258	706 bp upstream
Tssr108259	transcription start site region 108259	688 bp upstream