rs26971139 SNP Detail

Summary

• ID
  rs26971139
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:59839649 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCGGGTGA AGCCCACGTA
  CTGATCAAAT GCATAGATAG GTTCTGCAGT GTCCCATCCC AGATCCTGCA GTGACTTGGG
  GATGGGTCTT AAGTCCTTAC ACATAGCCCG AAGGCAATTT TATACAGTTG TTTTAATTCG
  CCTGCGTTTT GACTGTTCGC ATGAAGCCCA GAGCGGAATT TCTCACTTGT GGCATTATAT
  R
  AGCCCCGAAA AGTGTTCGAA TTTTGGTGGA CCTCAGACGT TCAGACTCGA GATTCTCACC
  GTGTACACAG TTTAGTACCC ATTTCAATGC GAGGCATCTT ACCTGTGTGG GCTCTGTTAG
  GTACTAGGGT TGTACACCGT AAAGAAAGGA GCAGCCATTT ACCCTTACAG GGCTTAACGG
  TTACAAGCAA AGAAAAACAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37194072	NES08424113	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26971139					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37194072	NES08424113	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:59839649 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2971	CpG island 2971	143 bp distal
Med9	mediator complex subunit 9	within coordinates
Med9os	mediator complex subunit 9, opposite strand	676 bp upstream
Tssr101871	transcription start site region 101871	562 bp downstream
Tssr108257	transcription start site region 108257	722 bp upstream
Tssr108258	transcription start site region 108258	660 bp upstream
Tssr108259	transcription start site region 108259	642 bp upstream