rs26971140 SNP Detail

Summary

• ID
  rs26971140
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:59839552 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CGGGTGAAGC CCACGTACTG ATCAAATGCA TAGATAGGTT
  CTGCAGTGTC CCATCCCAGA TCCTGCAGTG ACTTGGGGAT GGGTCTTAAG TCCTTACACA
  Y
  AGCCCGAAGG CAATTTTATA CAGTTGTTTT AATTCGCCTG CGTTTTGACT GTTCGCATGA
  AGCCCAGAGC GGAATTTCTC ACTTGTGGCA TTATATGAGC                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
ss37194073	NES08424112	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
rs26971140					SNP	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37194073	NES08424112	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:59839552 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2971	CpG island 2971	46 bp distal
Med9	mediator complex subunit 9	within coordinates
Med9os	mediator complex subunit 9, opposite strand	579 bp upstream
Rr448290	regulatory region 448290	592 bp distal
Rr448291	regulatory region 448291	12 bp distal
Tssr101871	transcription start site region 101871	465 bp downstream
Tssr108257	transcription start site region 108257	625 bp upstream
Tssr108258	transcription start site region 108258	563 bp upstream
Tssr108259	transcription start site region 108259	545 bp upstream