rs26971141 SNP Detail

Summary

• ID
  rs26971141
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:59839369 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAAGCCGCC ACCACCGCCT
  CAGCCTCTGC CGGTCGCTGC GCTCCCGCCG CCGGCGGCTC CGCGGCCTCA GTCCCCCGCT
  GGCGCGAAGG AGGAGAATTA CTCCTTTTTG CCGTTGGTTC ACAATGTCAT CAAATGGTAA
  GGGTCTAGGA AAGGTTAAGA CACCACTTTT TGCGACTCTA GTGTCCCTGG TTCCGAGCTG
  Y
  CAAAGCCCGT GGGCTCTGGA CCACGCCCCA TTTTCCCAGA GGGCCCACGT TGTCAGGCGC
  CTTAAGAGTT ACACTTTACT CCCGGGTGAA GCCCACGTAC TGATCAAATG CATAGATAGG
  TTCTGCAGTG TCCCATCCCA GATCCTGCAG TGACTTGGGG ATGGGTCTTA AGTCCTTACA
  CATAGCCCGA AGGCAATTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37194074	NES08424111	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26971141					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37194074	NES08424111	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:59839369 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2971	CpG island 2971	within coordinates
Med9	mediator complex subunit 9	within coordinates
Med9os	mediator complex subunit 9, opposite strand	396 bp upstream
Rr448290	regulatory region 448290	409 bp distal
Rr448291	regulatory region 448291	within coordinates
Tssr101871	transcription start site region 101871	282 bp downstream
Tssr108257	transcription start site region 108257	442 bp upstream
Tssr108258	transcription start site region 108258	380 bp upstream
Tssr108259	transcription start site region 108259	362 bp upstream