rs26971142 SNP Detail

Summary

• ID
  rs26971142
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:59838951 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAATC CTGACTACTC AATTTAGCTT
  Y
  CCCGACACCC GTCGCCTAGC AACGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J
ss37194075	NES08424126	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	T	C	T	T		C	C
ss323699685	CHEV_11_59761627	CHEVERUD	SCREENING_POP	f	SNP								C			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J
rs26971142					SNP	T	C	T	T	C	T	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37194075	NES08424126	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:59838951 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2971	CpG island 2971	within coordinates
Med9	mediator complex subunit 9	81 bp upstream
Med9os	mediator complex subunit 9, opposite strand	within coordinates
Rr448290	regulatory region 448290	within coordinates
Rr448291	regulatory region 448291	10 bp proximal
Tssr101871	transcription start site region 101871	84 bp upstream
Tssr108257	transcription start site region 108257	24 bp upstream
Tssr108258	transcription start site region 108258	within coordinates
Tssr108259	transcription start site region 108259	50 bp downstream