rs26971145 SNP Detail

Summary

• ID
  rs26971145
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:59837864 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTTTTGTTT CTTTTTCTAT
  AAAATGGAAA ACTAAGATAT ACCTTCCAGA GTTTCTCGGT GGATTAAATG AGGGTTTTAA
  TGGTTTCTCG TCACTTTCAT TCCACAGTAG TAGTGATAGC TACTGTTTGC TAACACTGCC
  GTTTTACCAT GCATTCTCCC AGATGTCTCC AGAGGTGTCT TCAAGTCTTT TCTGGCACAC
  Y
  TGGTTCCATC TTAGACCATT CTCTTCTCCC TTCTTCCTCA GGAATCATGG CCCTTCCCCT
  AAGGTGGAGA GGTCCTGGGT TAGAAGGAAA TCCTACAGTT TCCTGCAGTG AGAAATGTTC
  TTCTAATCAG ACACTTAGTT CCACAGGGGC CTGTATTCCC TAACTCCACT CCCCCCACCC
  ACCTTTCCCT TTGGGTGATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37194078	NES08424123	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	C	C	T	C		C	C	C	C	T	C
ss132243848	ENSMUSSNP4140643	ENSEMBL	ENSEMBL_Sanger	f	SNP		T						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26971145					SNP	C	T	C	C	C	T	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37194078	NES08424123	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:59837864 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2971	CpG island 2971	803 bp proximal
Med9	mediator complex subunit 9	1168 bp upstream
Med9os	mediator complex subunit 9, opposite strand	within coordinates
Rr448290	regulatory region 448290	692 bp proximal
Rr448291	regulatory region 448291	1097 bp proximal
Tssr101871	transcription start site region 101871	1171 bp upstream
Tssr108257	transcription start site region 108257	1041 bp downstream
Tssr108258	transcription start site region 108258	1069 bp downstream
Tssr108259	transcription start site region 108259	1137 bp downstream