rs26971669 SNP Detail

Summary

• ID
  rs26971669
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:58893138 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAGG ATTAGCTTGG AGCAGGGATC
  Y
  GGGCTTTGTT AGCAGGGCTC AGACT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37196002	NES08429724	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	C	C	T	C	T	T	T	C	C	T	C	C
ss132221335	ENSMUSSNP3903327	ENSEMBL	ENSEMBL_Sanger	f	SNP		C							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26971669					SNP	C	C	T	C	C	C	T	C	T	T	T	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37196002	NES08429724	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:58893138 () rs orientation: forward

Symbol	Name	Function Class
Gm10435	predicted gene 10435	598 bp upstream
Obscn	obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF	within coordinates
Rr448071	regulatory region 448071	108 bp proximal
Tssr101782	transcription start site region 101782	608 bp upstream
Tssr101783	transcription start site region 101783	645 bp upstream
Tssr101784	transcription start site region 101784	662 bp upstream
Tssr108189	transcription start site region 108189	119 bp upstream
Tssr108190	transcription start site region 108190	81 bp upstream
Tssr108191	transcription start site region 108191	43 bp downstream
Tssr108192	transcription start site region 108192	62 bp downstream
Tssr108193	transcription start site region 108193	79 bp downstream
Tssr108194	transcription start site region 108194	109 bp downstream