rs26971673 SNP Detail

Summary

• ID
  rs26971673
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:58891984 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTGCAGCA GTGGCGAGTG
  AGTCACAGGA GAAGGTGGCA GCGACTTAGC CCTGGCAAAT GGGGCAAGCT CGTTGTCTGA
  GGAAGATGAT GAGCTAGAGG CGCCACTGGC TTCCCCTCGT AGGTGCCGGG CCACTCCTAG
  AGATGGACTG TCTGGGGGAC CCTGAAGCAG CTCAGGGATG GAGCGCATCA CCAGGATAGA
  Y
  TTGTAGCTCA TCAAGGAACG CTGGAAATGA GGACAGAGGG ACATCCATTG GGCATGACTG
  GTCATGGCAG GAGGTGCGGT GCCCATTGCC TCTTTGCTCC AGAGGGGTTG GTTACCCAGG
  ACACCTGGGG CTTCTGTGCC TGCTGCTTTA TTGCTCTGCC CCACCACCTG GTACACTCAA
  GGGATCCCAG AATCATGGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37196006	NES08429720	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26971673					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37196006	NES08429720	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:58891984 () rs orientation: forward

Symbol	Name	Function Class
Gm10435	predicted gene 10435	1752 bp upstream
Obscn	obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF	within coordinates
Rr448071	regulatory region 448071	1262 bp proximal
Tssr101781	transcription start site region 101781	1788 bp downstream
Tssr101782	transcription start site region 101782	1762 bp upstream
Tssr101783	transcription start site region 101783	1799 bp upstream
Tssr101784	transcription start site region 101784	1816 bp upstream
Tssr108186	transcription start site region 108186	1921 bp upstream
Tssr108187	transcription start site region 108187	1877 bp upstream
Tssr108188	transcription start site region 108188	1751 bp upstream
Tssr108189	transcription start site region 108189	1024 bp downstream
Tssr108190	transcription start site region 108190	1040 bp downstream
Tssr108191	transcription start site region 108191	1197 bp downstream
Tssr108192	transcription start site region 108192	1216 bp downstream
Tssr108193	transcription start site region 108193	1233 bp downstream
Tssr108194	transcription start site region 108194	1263 bp downstream