rs26971674 SNP Detail

Summary

• ID
  rs26971674
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:58891710 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAGC ACTCTGTGGG GACGCTGGCA
  Y
  GGCCGCATCA GCAGTGGGCA TGCTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37196007	NES08429719	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	C	C	T		C	T	T	T	C	T	T
ss38854662	mCV23838134	ABI	CRAMUS_MOUSE	f	SNP		T					C		T
ss132221275	ENSMUSSNP1345431	ENSEMBL	ENSEMBL_Sanger	f	SNP		T							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs26971674					SNP	C	T	C	C	C	T	C	C	T	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37196007	NES08429719	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:58891710 () rs orientation: forward

Symbol	Name	Function Class
Obscn	obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF	within coordinates
Rr448071	regulatory region 448071	1536 bp proximal
Tssr101781	transcription start site region 101781	1514 bp downstream
Tssr108186	transcription start site region 108186	1647 bp upstream
Tssr108187	transcription start site region 108187	1603 bp upstream
Tssr108188	transcription start site region 108188	1477 bp upstream
Tssr108189	transcription start site region 108189	1298 bp downstream
Tssr108190	transcription start site region 108190	1314 bp downstream
Tssr108191	transcription start site region 108191	1471 bp downstream
Tssr108192	transcription start site region 108192	1490 bp downstream
Tssr108193	transcription start site region 108193	1507 bp downstream
Tssr108194	transcription start site region 108194	1537 bp downstream