rs26971675 SNP Detail

Summary

• ID
  rs26971675
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:58891615 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTTG TTCCCACGCT CTGCACCCTC
  R
  CCAGCTTGCT GGTAGAACAG GCTGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss37196008	NES08429716	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	A	G	G	G	G		G	G	G	G
ss323695590	CHEV_11_58814291	CHEVERUD	SCREENING_POP	f	SNP									G					A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs26971675					SNP	G	A	A	A	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37196008	NES08429716	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:58891615 () rs orientation: forward

Symbol	Name	Function Class
Obscn	obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF	within coordinates
Rr448071	regulatory region 448071	1631 bp proximal
Tssr101781	transcription start site region 101781	1419 bp downstream
Tssr108186	transcription start site region 108186	1552 bp upstream
Tssr108187	transcription start site region 108187	1508 bp upstream
Tssr108188	transcription start site region 108188	1382 bp upstream
Tssr108189	transcription start site region 108189	1393 bp downstream
Tssr108190	transcription start site region 108190	1409 bp downstream
Tssr108191	transcription start site region 108191	1566 bp downstream
Tssr108192	transcription start site region 108192	1585 bp downstream
Tssr108193	transcription start site region 108193	1602 bp downstream
Tssr108194	transcription start site region 108194	1632 bp downstream