rs26971692 SNP Detail

Summary

• ID
  rs26971692
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:58886320 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGACTCTGGG CATTTCCCAG GTCTATAACC TTAAGCAGGT
  TGTACTCAGT GACCATCATG TTCTCGGACC TCAGGTCCAG GTGCAGGATG TGTTGGGCAT
  S
  CAGGTACTGG GTGGCACTCA GCATCTGCCA CAGGTAGTCC TTCACATCAG ACTCTGAGTA
  GGATTCCCTA GGGGCACAGA CGGTTCAGAA CAGGCCCAAG                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37196025	NES08429818	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs26971692					SNP	G	G	G	G	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37196025	NES08429818	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:58886320 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2948	CpG island 2948	690 bp distal
Gm74293	predicted gene, 74293	within coordinates
Obscn	obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF	Coding-NonSynonymous
Rr448070	regulatory region 448070	524 bp proximal