rs26971693 SNP Detail

Summary

• ID
  rs26971693
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:58886056 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGTG AATAGAGCCA AGCACAAGCG
  K
  CTGGCCCTAG TGAGAGGCTG GTGGA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37196026	NES08429817	PERLEGEN	MM_PANEL2	f	SNP	T		G	T	T	T	G	G		G		G	T	G	G		T
ss132221083	ENSMUSSNP857590	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G						G
ss323695549	CHEV_11_58808732	CHEVERUD	SCREENING_POP	f	SNP											T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs26971693					SNP	T	T	G	T	T	T	G	G	G	G	T	G	T	G	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37196026	NES08429817	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:58886056 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2948	CpG island 2948	426 bp distal
Gm74293	predicted gene, 74293	within coordinates
Obscn	obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF	Intron
Rr448070	regulatory region 448070	788 bp proximal