rs26971698 SNP Detail

Summary

• ID
  rs26971698
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:58885108 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTTTGCTG GATCTCAGAG
  TCCCTCTTCC CGAAGAAGTC ACATTTTAAT TGGCTTACTG AGGATGGGTG GTCGGACCTA
  ACTTGGGACA CAAGTTGTGA TTACACTATG TCCCATAACA CTATGAATGA AGATCCCCAA
  TACCAGGGAG GTGATTCAAT GAAATAGAAA ATTCTTTGGC CGTTTTGCAT CTTTTATTAG
  Y
  GGGTGTCCCC GCATGTGGCA TGGCACATCT TGCTCTGTAG AGCTGGACCT CAGCGCACCT
  GGGCCAGGTT ATGCTTCTTG TAGAGGAGCG CACGCCGCTT CTCGCGCTCG CGCACAAAGG
  CGCGCAACCG CACGGTGGGG AAGGTTACGG GCGTGGGCCG GGAGCCGGTG GGGCCCTCCT
  CTGTCAGCCA TCCGCATTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37196031	NES08429812	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs26971698					SNP	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37196031	NES08429812	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:58885108 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2948	CpG island 2948	within coordinates
Gm74293	predicted gene, 74293	within coordinates
Obscn	obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF	mRNA-UTR
Rr448070	regulatory region 448070	1736 bp proximal