rs26971704 SNP Detail

Summary

• ID
  rs26971704
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:58884267 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGAG AACAAATTAG GGGTGTGTCT
  R
  CGCCCCATTA CTCCTGTCAA ACCAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
ss37196037	NES08429806	PERLEGEN	MM_PANEL2	f	SNP	G	A	G	G	G	G	G		G	G	G
ss323695533	CHEV_11_58806943	CHEVERUD	SCREENING_POP	f	SNP								A				A
SNP Consensus Information
SNP					Consensus Type	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
rs26971704					SNP	G	A	G	G	G	G	G	A	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37196037	NES08429806	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:58884267 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2948	CpG island 2948	803 bp proximal
Gm73767	predicted gene, 73767	1642 bp upstream
Gm74293	predicted gene, 74293	within coordinates
Obscn	obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF	815 bp downstream
Trim11	tripartite motif-containing 11	1983 bp downstream
Tssr108185	transcription start site region 108185	1676 bp upstream