rs26971705 SNP Detail

Summary

• ID
  rs26971705
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:58883931 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAGTTCTTC ATGTAGTCTG
  GCTGTTGATC CTTTGTCAGA TGTCTTAGCT AGCAAAGATG GCTCTCCTGT TCTGAAGGGT
  CTTTTCGGTA GTCAGAAGCT ATTTGATTTT ATGTTGTCCA TTTTTATCCC AGAAGGTTCC
  TACCTTGTTT TGTACCCAGA GGCAAGGAAA GTCTGACAGG CATGTGAGTT CTGGAGAGAG
  W
  TGCTTGGTGC TTCTGGAAAG CTTGCAGCTA ACTGCTCAGC TCTACATCAG GGCAGGTGGA
  CTTGAAGTCA GGGTTTCCAC AGGATGTTTG CTTGGGTTGC TTTAGCTGTT AAGGGGCTGG
  TTTCCCTAAT CTCGTTCTCC TCCCACCCTC TGGTGTTCAT AATTAACTTG AGGACATCTG
  AATTTGTCCT CTTATCAGTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37196038	NES08429805	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs26971705					SNP	A	A	A	A	A	A	A	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37196038	NES08429805	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:58883931 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2948	CpG island 2948	1139 bp proximal
Gm73767	predicted gene, 73767	1306 bp upstream
Gm74293	predicted gene, 74293	within coordinates
Obscn	obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF	1151 bp downstream
Trim11	tripartite motif-containing 11	1647 bp downstream
Tssr108185	transcription start site region 108185	1340 bp upstream