rs26973191 SNP Detail

Summary

• ID
  rs26973191
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:54460034 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTTTAAC TCTGTTGTTG
  CAGATAACAT CTTTTTAGAC TGAGAAATGA AATAATTTGA AGAATAGGCC CATGGGCATC
  CCTACAGCTG TCCTCCTTTG GTCTGAGTTT TAAGTGACAG TATTAGAGAG ATGGGAGAGT
  TGGTTGCAGA AACTGACAAG AGTCTGTTGC TTTCGTTTTC AGGAAAGAAA TGCTCTCATT
  R
  TATGGCAGGG TAGAAGAGGA TAGTCAGGAA ATTGGCTTAC TAAAATAAGA ATAGGATTCA
  AGGCAGCTTT AAAGAGTCTG TCACATTTGC CTAATTTCAT TAATAGAATG TGTTCTGTTT
  CTGAAAATAA ACATACTGGT TCCAAAATTT GCAACTAATA CTGGAGCCAC ACAGAGAAAC
  AGTTTCTTTT TAAATACACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37207016	NES08434459	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26973191					SNP	A	A	A	A	A	A	A	A	A	A	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37207016	NES08434459	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:54460034 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rapgef6	Rap guanine nucleotide exchange factor (GEF) 6			Intron
				Noncoding-Transcript-Variant
Rr447342	regulatory region 447342			932 bp distal
Tssr3500	transcription start site region 3500			1011 bp downstream
Tssr101518	transcription start site region 101518			995 bp downstream