rs26973192 SNP Detail

Summary

• ID
  rs26973192
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:54459630 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTAAAAA CATTACTACT
  TGACTGTTGG ATTAACTAGA AATTTTCTTA TCTGTGGGAA TTTTGCTTTA GCTTTAGTTT
  TACTTAGAGT AATTAACCAA AATAAGTATT TGTGGTAGCT TAGTACATAA ATTTGTGAAT
  TTTCTTGCCT TTGTAGTGAC TGAATTAGGA TGTAAATTAA ATCTGAGAAC TCAGGCAGTC
  R
  ACTAATGGGA AAACTTAATA TGATGGAAAA AATAACAAAA GAAAGAAAAC CATGGCAGTT
  CTCCTTGGCC TGCAGGACTG TTAGTCACTC ATAAAAACAG GCACTAGTGT AGAAATGTGT
  ATTAAAGTAA AGAAGCAAAT GAAACATTGA ACTTTGTTAA AGCTAGAGAA AGGAAGCTGT
  TGCTTTAGAA GTCTTTTTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37207017	NES08434458	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G	G	G	G	G	G		G	A	A	G
ss132139135	ENSMUSSNP1489925	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G						G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26973192					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37207017	NES08434458	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:54459630 () rs orientation: forward

Symbol	Name	Function Class
Rapgef6	Rap guanine nucleotide exchange factor (GEF) 6	within coordinates
Rr447342	regulatory region 447342	528 bp distal
Tssr3500	transcription start site region 3500	607 bp downstream
Tssr101518	transcription start site region 101518	591 bp downstream