rs26973200 SNP Detail

Summary

• ID
  rs26973200
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:54457434 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTTTAGAG AAGCTGAGTT
  CAGTTTTCAA CACCCCAGTT CCAGAGGGTC CAGTGCCGCT TTCTGGCCCC TGCAGACACC
  AGACGTATGT AGTGCACAGA CATACATGCA GAAAAAAAAC CTATACACAT AAAATGAATT
  TTTAAAATTT CAATAAGTAT GGTAAACATT GGCTGTCCAT TGTCATATTA GGACACCTGA
  Y
  AGGATGATTA TCTTGGTAGC TTATCTGACT ACAGTATGTG ATTGGAGAAC ATGTCTAAAG
  CAACAGGATC ACTGTTGATG TATTATAAGA CTGAAGTGAT TAAAACTCAG GTAAGGGATG
  GTGATGATAC TGTTAAAAGA AAAGGTGGCT GGGCGGTAGT GGTGCACACC TTTAATCCCA
  GCACTTGGGA GGCAGAGGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37207025	NES08434490	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26973200					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37207025	NES08434490	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:54457434 () rs orientation: forward

Symbol	Name	Function Class
Rapgef6	Rap guanine nucleotide exchange factor (GEF) 6	within coordinates
Rr447342	regulatory region 447342	1436 bp proximal
Tssr3500	transcription start site region 3500	1585 bp upstream
Tssr101518	transcription start site region 101518	1590 bp upstream