rs26974003 SNP Detail

Summary

• ID
  rs26974003
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:54799751 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGTGGGTAA CTGTCTGGGC AGCACATTGA AGGGTAGAGA
  TGTGGGGTGG GTATAGAGAG GGGCTGAGAT GGCAGATACA CACTGGGCCT ATGTATGTCC
  R
  TGCAAGTCGT GCGCTTGATA AAGGAGATTC CCAGCCCCCT TCCCTCAAGT CTCTTCATCT
  TAGTTCTGAG CTATGTGTGG CTGCTCTGGA CTCACTCAAG                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss37206230	NES08441294	PERLEGEN	MM_PANEL2	f	SNP	G	A	G	A	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs26974003					SNP	G	A	G	A	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37206230	NES08441294	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:54799751 () rs orientation: forward

Symbol	Name	Function Class
Gpx3	glutathione peroxidase 3	within coordinates
Tnip1	TNFAIP3 interacting protein 1	1860 bp downstream
Tssr3502	transcription start site region 3502	716 bp downstream
Tssr3503	transcription start site region 3503	1190 bp upstream
Tssr101556	transcription start site region 101556	1795 bp downstream
Tssr101557	transcription start site region 101557	1765 bp downstream
Tssr101558	transcription start site region 101558	1748 bp downstream
Tssr101559	transcription start site region 101559	1725 bp downstream
Tssr101560	transcription start site region 101560	1679 bp downstream
Tssr101561	transcription start site region 101561	368 bp downstream
Tssr101562	transcription start site region 101562	321 bp downstream
Tssr101563	transcription start site region 101563	309 bp downstream
Tssr101564	transcription start site region 101564	288 bp downstream
Tssr101565	transcription start site region 101565	127 bp upstream
Tssr101566	transcription start site region 101566	177 bp upstream
Tssr101567	transcription start site region 101567	538 bp upstream
Tssr101568	transcription start site region 101568	614 bp upstream
Tssr101569	transcription start site region 101569	697 bp upstream
Tssr101570	transcription start site region 101570	719 bp upstream
Tssr101571	transcription start site region 101571	773 bp upstream
Tssr101572	transcription start site region 101572	868 bp upstream
Tssr101573	transcription start site region 101573	905 bp upstream
Tssr101574	transcription start site region 101574	919 bp upstream
Tssr101575	transcription start site region 101575	967 bp upstream
Tssr101576	transcription start site region 101576	981 bp upstream
Tssr101577	transcription start site region 101577	1010 bp upstream
Tssr101578	transcription start site region 101578	1093 bp upstream
Tssr108006	transcription start site region 108006	1640 bp upstream
Tssr108007	transcription start site region 108007	351 bp upstream
Tssr108008	transcription start site region 108008	290 bp upstream
Tssr108009	transcription start site region 108009	274 bp upstream
Tssr108010	transcription start site region 108010	136 bp downstream
Tssr108011	transcription start site region 108011	732 bp downstream
Tssr108012	transcription start site region 108012	766 bp downstream
Tssr108013	transcription start site region 108013	860 bp downstream
Tssr108014	transcription start site region 108014	867 bp downstream
Tssr108015	transcription start site region 108015	950 bp downstream
Tssr108016	transcription start site region 108016	1002 bp downstream
Tssr108017	transcription start site region 108017	1053 bp downstream
Tssr108018	transcription start site region 108018	1068 bp downstream
Tssr108019	transcription start site region 108019	1104 bp downstream
Tssr108020	transcription start site region 108020	1160 bp downstream
Tssr108021	transcription start site region 108021	1180 bp downstream
Tssr108022	transcription start site region 108022	1191 bp downstream
Tssr108023	transcription start site region 108023	1444 bp downstream