rs26974004 SNP Detail

Summary

• ID
  rs26974004
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:54798833 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTAAAGGCAG ACTAGCTCAG CCCTGCTCTT AACTCAGTAT
  CCATCCAGGA AAGGGCACCT AGGGTCAGGG TGTATAAACG AGGCTGGCAA TGGCTTAACC
  S
  GGTATCTGAC TGGAACCATG TCTCCTTAAT GTCTCTATCC TGTCTTTTCT TCTCAGTGAG
  GGCAAACAGA AGCCTAAGGG CCAAAGCCTG ATGGCCCAAG                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ
ss37206231	NES08441310	PERLEGEN	MM_PANEL2	f	SNP	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ
rs26974004					SNP	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37206231	NES08441310	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:54798833 () rs orientation: forward

Symbol	Name	Function Class
Gpx3	glutathione peroxidase 3	within coordinates
Tssr3502	transcription start site region 3502	1634 bp downstream
Tssr101551	transcription start site region 101551	1742 bp downstream
Tssr101552	transcription start site region 101552	1679 bp downstream
Tssr101553	transcription start site region 101553	1226 bp downstream
Tssr101554	transcription start site region 101554	1214 bp downstream
Tssr101555	transcription start site region 101555	1172 bp downstream
Tssr101556	transcription start site region 101556	877 bp downstream
Tssr101557	transcription start site region 101557	847 bp downstream
Tssr101558	transcription start site region 101558	830 bp downstream
Tssr101559	transcription start site region 101559	807 bp downstream
Tssr101560	transcription start site region 101560	761 bp downstream
Tssr101561	transcription start site region 101561	528 bp upstream
Tssr101562	transcription start site region 101562	552 bp upstream
Tssr101563	transcription start site region 101563	602 bp upstream
Tssr101564	transcription start site region 101564	616 bp upstream
Tssr101565	transcription start site region 101565	1045 bp upstream
Tssr101566	transcription start site region 101566	1095 bp upstream
Tssr101567	transcription start site region 101567	1456 bp upstream
Tssr101568	transcription start site region 101568	1532 bp upstream
Tssr101569	transcription start site region 101569	1615 bp upstream
Tssr101570	transcription start site region 101570	1637 bp upstream
Tssr101571	transcription start site region 101571	1691 bp upstream
Tssr101572	transcription start site region 101572	1786 bp upstream
Tssr101573	transcription start site region 101573	1823 bp upstream
Tssr101574	transcription start site region 101574	1837 bp upstream
Tssr101575	transcription start site region 101575	1885 bp upstream
Tssr101576	transcription start site region 101576	1899 bp upstream
Tssr101577	transcription start site region 101577	1928 bp upstream
Tssr108006	transcription start site region 108006	722 bp upstream
Tssr108007	transcription start site region 108007	557 bp downstream
Tssr108008	transcription start site region 108008	617 bp downstream
Tssr108009	transcription start site region 108009	633 bp downstream
Tssr108010	transcription start site region 108010	1054 bp downstream
Tssr108011	transcription start site region 108011	1650 bp downstream
Tssr108012	transcription start site region 108012	1684 bp downstream
Tssr108013	transcription start site region 108013	1778 bp downstream
Tssr108014	transcription start site region 108014	1785 bp downstream
Tssr108015	transcription start site region 108015	1868 bp downstream
Tssr108016	transcription start site region 108016	1920 bp downstream
Tssr108017	transcription start site region 108017	1971 bp downstream
Tssr108018	transcription start site region 108018	1986 bp downstream