rs26974817 SNP Detail

Summary

• ID
  rs26974817
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:48746841 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCATTGCTT TTTATATTTT
  CATAAAGTGA TGAGGAAGAA CCCTTACTCC TTTACCGGGA TCCCCACCTA AAGGAACTAC
  CACGTTTAGA CTTGCCTCTC TCCATTCACC AGCCAACTAG CCTGTCACCC TCCAGGCTCT
  GCGTTCTTCC AGAGCTTTCG GGCATGGTCA CAGCTGCGTC TCAGTTAGGT TCACGTCAGA
  R
  AGGGTGCCCA GCCTCTGCAG TGAAAGAATG CTTCTGCCTC CCAACTCCGG ATCCAGGAGT
  TCTCAAACAG GCCAAAGGAG CATGGACATT TACGCTGTAC AGCATTGGCT ATGGCTGAGT
  CTGGGGGCAG ATACAAGGTT AGACTGTTAT AAATAAATTT AGGAAAAAGT AAAGTCTTGA
  AGATTCTGCC ATACCATCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37219146	NES08450668	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	G	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26974817					SNP	A	A	A	A	A	A	G	A	A	G	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37219146	NES08450668	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:48746841 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2786	CpG island 2786	1792 bp distal
Cpgi2787	CpG island 2787	233 bp distal
Cpgi2788	CpG island 2788	859 bp proximal
Gm73211	predicted gene, 73211	within coordinates
n-TLaag6	nuclear encoded tRNA leucine 6 (anticodon AAG)	960 bp downstream
n-TPtgg4	nuclear encoded tRNA proline 4 (anticodon TGG)	266 bp upstream
n-TVaac7	nuclear encoded tRNA valine 7 (anticodon AAC)	623 bp upstream
Rr402521	regulatory region 402521	760 bp upstream
Rr446144	regulatory region 446144	887 bp proximal
Rr446145	regulatory region 446145	1709 bp proximal