rs26974818 SNP Detail

Summary

• ID
  rs26974818
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:48746389 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGTTACGA GAGCAAGACA
  ATCTCTAGCG GGTGGAGGCT GGAGGTGACC GCGGTGAGTG GGGAGAGTAG CAATCAGGGT
  CGCCCGCTGT TTCATAACAG CTGTTGATAT CGACAGAAAA CTCAACCCGA GGCCCGGCTC
  TGAGTGAATG ATTGCGAATG TAAACGACAG GGAGCCCGAA GCACTCTCTT TTGCTATGAA
  R
  TGAACCAGCG CAATCAAAGC CGGTTAGACG AAGGTTGGGT CGGATGCATA GGAGGAGGGA
  GCGCTTCCCA GCACGCCTGC GCCTCAGTCA GTCTGCGCAG GAGGTGGTTC CCGGGCAATC
  CAGGAGAACT TGGCCAGTGC TAAGAACCGC ACGGTCTGTG AATCAACTAC TCCGGTCAGA
  TTCACCGCGA GCGGGCATTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37219147	NES08450667	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs26974818					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37219147	NES08450667	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:48746389 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2786	CpG island 2786	1340 bp distal
Cpgi2787	CpG island 2787	within coordinates
Cpgi2788	CpG island 2788	1311 bp proximal
Gm73211	predicted gene, 73211	within coordinates
n-TLaag6	nuclear encoded tRNA leucine 6 (anticodon AAG)	1412 bp downstream
n-TPtgg4	nuclear encoded tRNA proline 4 (anticodon TGG)	718 bp upstream
n-TTtgt2	nuclear encoded tRNA threonine 2 (anticodon TGT)	1871 bp downstream
n-TVaac7	nuclear encoded tRNA valine 7 (anticodon AAC)	1075 bp upstream
Rr402521	regulatory region 402521	1212 bp upstream
Rr446142	regulatory region 446142	1579 bp distal
Rr446143	regulatory region 446143	1890 bp distal
Rr446144	regulatory region 446144	1339 bp proximal