rs26974819 SNP Detail

Summary

• ID
  rs26974819
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:48746158 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTGTTATA AATGTCCTGA
  GTCTTAACAA ATTTCGTTAG CTTGTTAATC TTACCAGCCT CCTTACCAGT CTCTGTATTC
  GGAGGAAATA GTTAGACAGC CCAGGAGTTT CAGGTGTCTG GGGATAACGT TGCTTTCCTG
  GCTCGTACAT ATTCCAGAGG AATGGGGACC TCAGAAAAGC CCCGAGTGGG TTGTCGTAGG
  W
  GGCTCAGGAT TCGAAAACAC AATCTACATC CAGGTTACGA GAGCAAGACA ATCTCTAGCG
  GGTGGAGGCT GGAGGTGACC GCGGTGAGTG GGGAGAGTAG CAATCAGGGT CGCCCGCTGT
  TTCATAACAG CTGTTGATAT CGACAGAAAA CTCAACCCGA GGCCCGGCTC TGAGTGAATG
  ATTGCGAATG TAAACGACAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37219148	NES08450666	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	T	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs26974819					SNP	A	A	A	A	T	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37219148	NES08450666	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:48746158 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2785	CpG island 2785	1839 bp distal
Cpgi2786	CpG island 2786	1109 bp distal
Cpgi2787	CpG island 2787	within coordinates
Cpgi2788	CpG island 2788	1542 bp proximal
Gm16170	predicted gene 16170	1838 bp upstream
Gm73211	predicted gene, 73211	within coordinates
n-TLaag6	nuclear encoded tRNA leucine 6 (anticodon AAG)	1643 bp downstream
n-TPtgg4	nuclear encoded tRNA proline 4 (anticodon TGG)	949 bp upstream
n-TTtgt2	nuclear encoded tRNA threonine 2 (anticodon TGT)	1640 bp downstream
n-TVaac7	nuclear encoded tRNA valine 7 (anticodon AAC)	1306 bp upstream
Rr402520	regulatory region 402520	1780 bp downstream
Rr402521	regulatory region 402521	1443 bp upstream
Rr446140	regulatory region 446140	1849 bp distal
Rr446142	regulatory region 446142	1348 bp distal
Rr446143	regulatory region 446143	1659 bp distal
Rr446144	regulatory region 446144	1570 bp proximal