rs26974820 SNP Detail

Summary

• ID
  rs26974820
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:48745967 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGAAAACAG CTGCATCTCT
  GAAAAACCCA CCCCAGCAGG GACAGTGAGT GACCCACGAA GGTTACATCC CAGGAGCGCC
  CTAGTGTACT TGCAAACAGC TCCACCAGAG TCCACCCCAG CGACAGCTTC CAGTTTTTAT
  ACTCCTAGGG AGAGAGGCTT TGTGCTTCTT GGGCCTCTCT GGGCTTTCAG AGCCTGTTAT
  W
  AATGTCCTGA GTCTTAACAA ATTTCGTTAG CTTGTTAATC TTACCAGCCT CCTTACCAGT
  CTCTGTATTC GGAGGAAATA GTTAGACAGC CCAGGAGTTT CAGGTGTCTG GGGATAACGT
  TGCTTTCCTG GCTCGTACAT ATTCCAGAGG AATGGGGACC TCAGAAAAGC CCCGAGTGGG
  TTGTCGTAGG AGGCTCAGGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss37219149	NES08450665	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs26974820					SNP	A	A	A	A	A	A	T	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37219149	NES08450665	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:48745967 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2785	CpG island 2785	1648 bp distal
Cpgi2786	CpG island 2786	918 bp distal
Cpgi2787	CpG island 2787	183 bp proximal
Cpgi2788	CpG island 2788	1733 bp proximal
Gm16170	predicted gene 16170	1647 bp upstream
Gm73211	predicted gene, 73211	within coordinates
n-TLaag6	nuclear encoded tRNA leucine 6 (anticodon AAG)	1834 bp downstream
n-TPtgg4	nuclear encoded tRNA proline 4 (anticodon TGG)	1140 bp upstream
n-TTtgt2	nuclear encoded tRNA threonine 2 (anticodon TGT)	1449 bp downstream
n-TVaac7	nuclear encoded tRNA valine 7 (anticodon AAC)	1497 bp upstream
Rr402520	regulatory region 402520	1589 bp downstream
Rr402521	regulatory region 402521	1634 bp upstream
Rr446140	regulatory region 446140	1658 bp distal
Rr446141	regulatory region 446141	1932 bp distal
Rr446142	regulatory region 446142	1157 bp distal
Rr446143	regulatory region 446143	1468 bp distal
Rr446144	regulatory region 446144	1761 bp proximal