rs26974821 SNP Detail

Summary

• ID
  rs26974821
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:48744558 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTTTTCCA ATTTGGCGTT
  AGAGTCTGCG GCTGCGCAAC GATTGTGATT CTGTTAACTA CTCGTGCACA AGAGCCACAT
  TTGTGACTGG CTCCATAGCT CAGGGGTTAG AGCACTGGTC TTGTAAACCA GGGGTCGCGA
  GTTCAAATCT CGCTGGGGCC TTAAGGTTAC TTTTTCACCA TTATAGTCCA GGACCAGAAC
  R
  TGAAGAGGAA ATGCTGGAAC TGTGTTTCTG GGTCTGTTCT TTTGCTTCTC ATGAAGCCGC
  AACCCAGAGC TGAATTCCTG TGCCCTTGAA ATCAGATCCA CTGCAAATTT CCCTATCATG
  ATCATACCTC CAGTGCTATT TTTCCCTCGC TGTTCCTTTT CTGTACTCTC TTATTGAGGT
  CACTCCCTAC TCAACGCCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37219150	NES08450679	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A		A	G		A	G	A
ss132111676	ENSMUSSNP1595824	ENSEMBL	ENSEMBL_Sanger	f	SNP		A						A			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs26974821					SNP	A	A	A	A	A	A	A	A	A	G	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37219150	NES08450679	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:48744558 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2785	CpG island 2785	239 bp distal
Cpgi2786	CpG island 2786	94 bp proximal
Cpgi2787	CpG island 2787	1592 bp proximal
Gm16170	predicted gene 16170	238 bp upstream
Gm73211	predicted gene, 73211	699 bp downstream
n-TTtgt2	nuclear encoded tRNA threonine 2 (anticodon TGT)	40 bp downstream
Rr402520	regulatory region 402520	180 bp downstream
Rr446140	regulatory region 446140	249 bp distal
Rr446141	regulatory region 446141	523 bp distal
Rr446142	regulatory region 446142	within coordinates
Rr446143	regulatory region 446143	59 bp distal