rs26974822 SNP Detail

Summary

• ID
  rs26974822
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:48744434 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACCAGTTTT TTAAAAGTCT
  CTTTCCGAAT ACTCACGTTC CTTCTGTTTT ATCTGTCTCG GTGGATAGTG TAATCCTGTC
  GGCTGCTGCC GCTACTCGGT TGAAAGACTA AAATTAGATT TTATCATTTT TCCAATTTGG
  CGTTAGAGTC TGCGGCTGCG CAACGATTGT GATTCTGTTA ACTACTCGTG CACAAGAGCC
  R
  CATTTGTGAC TGGCTCCATA GCTCAGGGGT TAGAGCACTG GTCTTGTAAA CCAGGGGTCG
  CGAGTTCAAA TCTCGCTGGG GCCTTAAGGT TACTTTTTCA CCATTATAGT CCAGGACCAG
  AACATGAAGA GGAAATGCTG GAACTGTGTT TCTGGGTCTG TTCTTTTGCT TCTCATGAAG
  CCGCAACCCA GAGCTGAATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37219151	NES08450721	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs26974822					SNP	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37219151	NES08450721	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:48744434 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2785	CpG island 2785	115 bp distal
Cpgi2786	CpG island 2786	218 bp proximal
Cpgi2787	CpG island 2787	1716 bp proximal
Gm16170	predicted gene 16170	114 bp upstream
Gm73211	predicted gene, 73211	823 bp downstream
n-TTtgt2	nuclear encoded tRNA threonine 2 (anticodon TGT)	12 bp upstream
Rr402520	regulatory region 402520	56 bp downstream
Rr446140	regulatory region 446140	125 bp distal
Rr446141	regulatory region 446141	399 bp distal
Rr446142	regulatory region 446142	within coordinates
Rr446143	regulatory region 446143	44 bp proximal