rs26974824 SNP Detail

Summary

• ID
  rs26974824
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:48744407 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCGCTCAC ACGGCAGGTA
  CAACTCGGAC CAGTTTTTTA AAAGTCTCTT TCCGAATACT CACGTTCCTT CTGTTTTATC
  TGTCTCGGTG GATAGTGTAA TCCTGTCGGC TGCTGCCGCT ACTCGGTTGA AAGACTAAAA
  TTAGATTTTA TCATTTTTCC AATTTGGCGT TAGAGTCTGC GGCTGCGCAA CGATTGTGAT
  Y
  CTGTTAACTA CTCGTGCACA AGAGCCACAT TTGTGACTGG CTCCATAGCT CAGGGGTTAG
  AGCACTGGTC TTGTAAACCA GGGGTCGCGA GTTCAAATCT CGCTGGGGCC TTAAGGTTAC
  TTTTTCACCA TTATAGTCCA GGACCAGAAC ATGAAGAGGA AATGCTGGAA CTGTGTTTCT
  GGGTCTGTTC TTTTGCTTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37219153	NES08450719	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C		T	T		T	C	C
ss132111672	ENSMUSSNP3313885	ENSEMBL	ENSEMBL_Sanger	f	SNP		T						T			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs26974824					SNP	T	T	T	T	T	T	C	T	T	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37219153	NES08450719	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:48744407 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2785	CpG island 2785	88 bp distal
Cpgi2786	CpG island 2786	245 bp proximal
Cpgi2787	CpG island 2787	1743 bp proximal
Gm16170	predicted gene 16170	87 bp upstream
Gm73211	predicted gene, 73211	850 bp downstream
n-TTtgt2	nuclear encoded tRNA threonine 2 (anticodon TGT)	39 bp upstream
Rr402520	regulatory region 402520	29 bp downstream
Rr446138	regulatory region 446138	1975 bp distal
Rr446140	regulatory region 446140	98 bp distal
Rr446141	regulatory region 446141	372 bp distal
Rr446142	regulatory region 446142	within coordinates
Rr446143	regulatory region 446143	71 bp proximal