rs26974828 SNP Detail

Summary

• ID
  rs26974828
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:48742793 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAGAGTGCT TAGATCTGTG
  TAATAATTTA CATCCAGCTT CCCTGTGATG GTGAAAGAAA CTCAATATGG TACCAGGTAA
  CTCTTAAGGG CCACTGACCT TTGCCCAGGA ATGCCCTGAG ATCCTAGTGG CCTGCAGGTG
  AGATAAGAGA AAGAGGAATG GAGCTTATAA AAGCAGGTAC TTCTGGTTTT ATAAGCTCCA
  W
  CATTGCCGTG GGACTGGGGT AAGTGGTCTT TTCATTACTG TACAAGAGGA ATGAGAAACA
  ACTGAGGGGG AAAACAATTT TCTTGCCCAG CTACGAATTC TGTAGATAAT TATACTGGGC
  ATCTTTGGTG TCTGCCTTTA TAAACATTTC CTTTAGCTCT CTCTGGCGCA GCATGCTGTT
  TGACTCTAAA ACTGCCTCCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37219157	NES08450736	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	T	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs26974828					SNP	A	A	A	A	A	A	A	A	A	A	T	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37219157	NES08450736	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:48742793 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2785	CpG island 2785	1287 bp proximal
Cpgi2786	CpG island 2786	1859 bp proximal
Gm16170	predicted gene 16170	within coordinates
n-TTtgt2	nuclear encoded tRNA threonine 2 (anticodon TGT)	1653 bp upstream
Rr402520	regulatory region 402520	1284 bp upstream
Rr446137	regulatory region 446137	609 bp distal
Rr446138	regulatory region 446138	361 bp distal
Rr446139	regulatory region 446139	439 bp distal
Rr446140	regulatory region 446140	537 bp proximal
Rr446141	regulatory region 446141	1221 bp proximal
Rr446142	regulatory region 446142	1517 bp proximal
Rr446143	regulatory region 446143	1685 bp proximal
Trim7	tripartite motif-containing 7	774 bp downstream