rs26974829 SNP Detail

Summary

• ID
  rs26974829
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:48742786 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTTCCCCTA GAGTGCTTAG
  ATCTGTGTAA TAATTTACAT CCAGCTTCCC TGTGATGGTG AAAGAAACTC AATATGGTAC
  CAGGTAACTC TTAAGGGCCA CTGACCTTTG CCCAGGAATG CCCTGAGATC CTAGTGGCCT
  GCAGGTGAGA TAAGAGAAAG AGGAATGGAG CTTATAAAAG CAGGTACTTC TGGTTTTATA
  R
  GCTCCAACAT TGCCGTGGGA CTGGGGTAAG TGGTCTTTTC ATTACTGTAC AAGAGGAATG
  AGAAACAACT GAGGGGGAAA ACAATTTTCT TGCCCAGCTA CGAATTCTGT AGATAATTAT
  ACTGGGCATC TTTGGTGTCT GCCTTTATAA ACATTTCCTT TAGCTCTCTC TGGCGCAGCA
  TGCTGTTTGA CTCTAAAACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37219158	NES08450734	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs26974829					SNP	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37219158	NES08450734	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:48742786 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2785	CpG island 2785	1294 bp proximal
Cpgi2786	CpG island 2786	1866 bp proximal
Gm16170	predicted gene 16170	within coordinates
n-TTtgt2	nuclear encoded tRNA threonine 2 (anticodon TGT)	1660 bp upstream
Rr402520	regulatory region 402520	1291 bp upstream
Rr446137	regulatory region 446137	602 bp distal
Rr446138	regulatory region 446138	354 bp distal
Rr446139	regulatory region 446139	432 bp distal
Rr446140	regulatory region 446140	544 bp proximal
Rr446141	regulatory region 446141	1228 bp proximal
Rr446142	regulatory region 446142	1524 bp proximal
Rr446143	regulatory region 446143	1692 bp proximal
Trim7	tripartite motif-containing 7	767 bp downstream