rs26974847 SNP Detail

Summary

• ID
  rs26974847
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:48697394 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATCTCTGCT TTGCTTTTAA
  AAGAGTCCAC AAAAAAAGCA AATAAACACT TTTTTTTATT TTTGCAACAC AACCCACCTT
  TCCCCAAGAA CATGAGTTGA CCTCAGCCAC CAAAGCAGAG GACAAAAGCT GTTTAGTGTC
  AGAAGGCAAG GGGTTACTAG AAAAATAGAT TATACCCAGT GGTCTCCCGA GGATCCAGAC
  Y
  CCTGTCTCAA GCTCCCTAAC AGGGCTTACC AAGTGGAAAT AAAAGGCATG GAGAGGCCAG
  AAACTTCTGA ATAAGAGCCT GACAGAGAAG AAGACTTAGG CTCCTACATA AGATGCAGAG
  AGAAAATAAT TTATTGGGTA ATGTATGTGG TGTCATGCTG ACCATCTCAG ATCTCACTGA
  AGCTAAATTC TGGCCAGTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37219176	NES08451616	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T		C	C	C		C
ss323664628	CHEV_11_48620069	CHEVERUD	SCREENING_POP	f	SNP										T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs26974847					SNP	C	C	C	C	C	C	C	C	T	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37219176	NES08451616	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:48697394 () rs orientation: forward

Symbol	Name	Function Class
Rack1	receptor for activated C kinase 1	326 bp downstream
Trim41	tripartite motif-containing 41	within coordinates
Tssr3482	transcription start site region 3482	1892 bp downstream
Tssr107636	transcription start site region 107636	948 bp upstream