rs26974849 SNP Detail

Summary

• ID
  rs26974849
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:48697161 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCAAGAGCA GACCACTGGT
  GTTTACTATC CTGGCATGTA AGCAGTAACA GCTAAGTAAA CACATCAGAT GTCATTTCAT
  CACCAATTAG ACAAAAATCC ATCAACTTGG TTTGGTCTCC TGGATCCACA CTATGCCTCA
  TCATCAACTC ACATATGCAA GCATAATTTA GCCCACAAAT TCAGACCAGG CCTGTCCTGG
  R
  TCAGAAAACA GGGAGCCTGA GGTCTGAAAA ACAATCTCTG CTTTGCTTTT AAAAGAGTCC
  ACAAAAAAAG CAAATAAACA CTTTTTTTTA TTTTTGCAAC ACAACCCACC TTTCCCCAAG
  AACATGAGTT GACCTCAGCC ACCAAAGCAG AGGACAAAAG CTGTTTAGTG TCAGAAGGCA
  AGGGGTTACT AGAAAAATAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
ss37219178	NES08451614	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
rs26974849					SNP	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37219178	NES08451614	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:48697161 () rs orientation: forward

Symbol	Name	Function Class
Rack1	receptor for activated C kinase 1	93 bp downstream
Trim41	tripartite motif-containing 41	70 bp downstream
Tssr107636	transcription start site region 107636	715 bp upstream