rs26974850 SNP Detail

Summary

• ID
  rs26974850
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:48696993 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATTCATTT ACAGACTCTG
  TTTGCTGGCT ATACAGACAA CTTGGTGCGA GTATGGCAGG TAACTATTGG TACCCGCTAA
  AAGTTTTATG ACAAAGTCTT AGAAATAAAC TGGCTTTCTG AAACTGGCTT CTATATGTGA
  GTCCTGGAAG CTGAGTCCCT GGTTCTACTG CAAGAGCAGA CCACTGGTGT TTACTATCCT
  R
  GCATGTAAGC AGTAACAGCT AAGTAAACAC ATCAGATGTC ATTTCATCAC CAATTAGACA
  AAAATCCATC AACTTGGTTT GGTCTCCTGG ATCCACACTA TGCCTCATCA TCAACTCACA
  TATGCAAGCA TAATTTAGCC CACAAATTCA GACCAGGCCT GTCCTGGGTC AGAAAACAGG
  GAGCCTGAGG TCTGAAAAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37219179	NES08451613	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs26974850					SNP	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37219179	NES08451613	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:48696993 () rs orientation: forward

Symbol	Name	Function Class
Rack1	receptor for activated C kinase 1	within coordinates
Trim41	tripartite motif-containing 41	238 bp downstream
Tssr107636	transcription start site region 107636	547 bp upstream