rs26974853 SNP Detail

Summary

• ID
  rs26974853
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:48695290 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCGCTGCC ACTGGCCCCA
  GCATCAAGAT CTGGGTAAGT GTGATCTGTT CCATACATGG CACATTGACT GACTGGCAGA
  AACCCAGCTT TCTCAGTAGA TTCCATCATT TAGTTGCTAT CAGCACCAAG GGGAGTTCAT
  TTTTTTCCCC CTAAACAGTT TGCAGCACTG TGTGACATCT GCCTAATGAA AAGTAATGCC
  Y
  GTGTATATAG CAGTTTATGG AGTGTTCTAA TTGCTATGTG GTCCAAGGTA ATTCTCTTGT
  GAGAGCCAGT GCAGGTGGCA TCTAGCCACC AGATACCTAT TAGGAGTTAA GTAGCTGCCA
  TGTATCATGA AGACCACAGT GTGTATAGCA TTGTAGTAGA ACACTCACTT AGTATAAAAG
  AGATCCAAAT TTAGTCCCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37219182	NES08451675	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26974853					SNP	T	T	T	T	T	T	T	T	T	T	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37219182	NES08451675	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:48695290 () rs orientation: forward

Symbol	Name	Function Class
Rack1	receptor for activated C kinase 1	within coordinates
Rr246622	regulatory region 246622	1289 bp distal
Snord95	small nucleolar RNA, C/D box 95	1257 bp downstream
Trim41	tripartite motif-containing 41	1941 bp downstream
Tssr101145	transcription start site region 101145	1014 bp downstream
Tssr107636	transcription start site region 107636	1120 bp downstream