rs26974854 SNP Detail

Summary

• ID
  rs26974854
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:48694908 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTAAAGACC AACCACATTG
  GCCACACTGG CTACCTGAAC ACAGTGACTG TCTCTCCAGA TGGATCCCTC TGTGCTTCTG
  GAGGCAAGGT ATTTGGGTTT TGTCATCTTT ACAGAGAAAG CTTTTTATCT GGTTATAAGC
  ATTATTTTAA AATATGTAGA AAAGTATACC AAAGATGTTT ATTTTTATGG TTGGGGTTTT
  R
  ACACATTAGA GGAAAGGACT TAGAGACAGG AACACTATAC AACCTGACCT AACTTCCCTT
  TTCTGTCTGC CCAGGATGGC CAGGCTATGC TGTGGGATCT CAATGAAGGC AAGCACCTCT
  ACACTTTAGA TGGTGGGGAC ATCATCAATG CCTTGTGCTT CAGCCCCAAC CGCTACTGGC
  TCTGCGCTGC CACTGGCCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37219183	NES08451674	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26974854					SNP	G	G	G	G	G	G	A	G	G	G	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37219183	NES08451674	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:48694908 () rs orientation: forward

Symbol	Name	Function Class
Rack1	receptor for activated C kinase 1	within coordinates
Rr246622	regulatory region 246622	907 bp distal
Snord95	small nucleolar RNA, C/D box 95	875 bp downstream
Snord96a	small nucleolar RNA, C/D box 96A	1972 bp downstream
Tssr101143	transcription start site region 101143	1785 bp downstream
Tssr101144	transcription start site region 101144	1729 bp downstream
Tssr101145	transcription start site region 101145	632 bp downstream
Tssr107636	transcription start site region 107636	1502 bp downstream