rs26974856 SNP Detail

Summary

• ID
  rs26974856
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:48694678 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTGAGGCT AGGATTCATT
  CTGTATCCCT TTACTGACCT GTGTCATCCA AGCACAGGTA CTGTGACCTG TCTTGGTCAC
  CCAGGTACTG GAACTATAGA GGCTTGCATG ACATGCCTGT TCAGTGGTCC CTTAAAAGTG
  GTGTTCATAC CTTTCCTGTT TAGTGTATAC CTTTATCCTG GTCACCCACA GACTCCTGTT
  Y
  TTTCAGGTGT GGAATCTGGC TAACTGCAAG CTAAAGACCA ACCACATTGG CCACACTGGC
  TACCTGAACA CAGTGACTGT CTCTCCAGAT GGATCCCTCT GTGCTTCTGG AGGCAAGGTA
  TTTGGGTTTT GTCATCTTTA CAGAGAAAGC TTTTTATCTG GTTATAAGCA TTATTTTAAA
  ATATGTAGAA AAGTATACCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37219185	NES08451668	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26974856					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37219185	NES08451668	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:48694678 () rs orientation: forward

Symbol	Name	Function Class
Rack1	receptor for activated C kinase 1	within coordinates
Rr246622	regulatory region 246622	677 bp distal
Snord95	small nucleolar RNA, C/D box 95	645 bp downstream
Snord96a	small nucleolar RNA, C/D box 96A	1742 bp downstream
Tssr101143	transcription start site region 101143	1555 bp downstream
Tssr101144	transcription start site region 101144	1499 bp downstream
Tssr101145	transcription start site region 101145	402 bp downstream
Tssr107636	transcription start site region 107636	1732 bp downstream