rs26974857 SNP Detail

Summary

• ID
  rs26974857
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:48694631 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCTTTGGC TTCTTATGGT
  TCATCGCAAT ACTTTAGGAC TGTGGTTTGT TGAGGCTAGG ATTCATTCTG TATCCCTTTA
  CTGACCTGTG TCATCCAAGC ACAGGTACTG TGACCTGTCT TGGTCACCCA GGTACTGGAA
  CTATAGAGGC TTGCATGACA TGCCTGTTCA GTGGTCCCTT AAAAGTGGTG TTCATACCTT
  Y
  CCTGTTTAGT GTATACCTTT ATCCTGGTCA CCCACAGACT CCTGTTTTTT CAGGTGTGGA
  ATCTGGCTAA CTGCAAGCTA AAGACCAACC ACATTGGCCA CACTGGCTAC CTGAACACAG
  TGACTGTCTC TCCAGATGGA TCCCTCTGTG CTTCTGGAGG CAAGGTATTT GGGTTTTGTC
  ATCTTTACAG AGAAAGCTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37219187	NES08451662	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs26974857					SNP	T	T	T	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37219187	NES08451662	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:48694631 () rs orientation: forward

Symbol	Name	Function Class
Rack1	receptor for activated C kinase 1	within coordinates
Rr246622	regulatory region 246622	630 bp distal
Snord95	small nucleolar RNA, C/D box 95	598 bp downstream
Snord96a	small nucleolar RNA, C/D box 96A	1695 bp downstream
Tssr101142	transcription start site region 101142	1995 bp downstream
Tssr101143	transcription start site region 101143	1508 bp downstream
Tssr101144	transcription start site region 101144	1452 bp downstream
Tssr101145	transcription start site region 101145	355 bp downstream
Tssr107636	transcription start site region 107636	1779 bp downstream