rs26974858 SNP Detail

Summary

• ID
  rs26974858
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:48693925 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGCTGAGA TGGGTGTGCT
  TTTAAACTGC TGGGGTTAAA AGGCTAGCTA GAGGTGGTAC TTCCCCCTTT CATTCCATAT
  TAGGTTGGGC CATGGAAACC CAAACCAGGG CATAAATTGG GCAGGGTCTT GGCACATACG
  CAGATACCCA GATATCTACT AAAACTGCCC TAAGGGTTAA ATGATCTTAA GTCTCTCACC
  K
  ACCTCCTAGA GATGTGTATT TAAGGGGCTA CAAGCCAGGC CCAACAGTGA TGACCACAAC
  ATGCCATCTG AGTTGCTTTG CTGAAATCCA GAGGCTGTTT CTGAGCTGTG CCTGGTCCTG
  TACTCTATGA GTAGTGGGTG AGCTCTGGGG GTCATCTTAG GATTCAAATG TCAGCGGGCT
  TGACCTCAGG TGGCTTTGCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37219190	NES08451692	PERLEGEN	MM_PANEL2	f	SNP	T	T	G	T	T	T	T	T	T	G		T	T	T	T		T
ss323664626	CHEV_11_48616600	CHEVERUD	SCREENING_POP	f	SNP											G					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs26974858					SNP	T	T	G	T	T	T	T	T	T	G	G	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37219190	NES08451692	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:48693925 () rs orientation: forward

Symbol	Name	Function Class
Rack1	receptor for activated C kinase 1	within coordinates
Rr246622	regulatory region 246622	within coordinates
Snord95	small nucleolar RNA, C/D box 95	41 bp upstream
Snord96a	small nucleolar RNA, C/D box 96A	989 bp downstream
Tssr101142	transcription start site region 101142	1289 bp downstream
Tssr101143	transcription start site region 101143	802 bp downstream
Tssr101144	transcription start site region 101144	746 bp downstream
Tssr101145	transcription start site region 101145	324 bp upstream