rs26974860 SNP Detail

Summary

• ID
  rs26974860
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:48693272 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGAAAGTGA CCAGGTTCTC
  CTTCTTAGGG GCACCACCAC AAGGCGATTT GTCGGCCACA CCAAGGATGT GTTGAGCGTG
  GCCTTCTCCT CTGACAACCG GCAGATTGTC TCTGGGTCCC GAGACAAGAC CATAAAGTTA
  TGGAATACTC TGGGTGTCTG CAAGTACACG GTCCAGGTAA AGGGATAAGG GTGGTAGGGA
  Y
  AGCATGTTCA GGGCTACCTC CCGCCCCCTG GGGACTTGGG TTGTTTCTGA GGTGGGTTCC
  TCACTAGGTA GTCCTGGTGG CCTGGAGTGA TCTGACTCCT AGGTGTTGGG GTGAAGCTGT
  GTGCCACCGA CTGCCTCTTT AGCTTTTCAT TGTGTGTTGT TAGTCCTGTG ACTGTCTGGG
  GTTGTTTTTT GTTATTTTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37219192	NES08451724	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26974860					SNP	C	C	C	C	C	C	C	C	C	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37219192	NES08451724	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:48693272 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2778	CpG island 2778	1563 bp distal
Gm25296	predicted gene, 25296	1513 bp downstream
Rack1	receptor for activated C kinase 1	within coordinates
Rr246622	regulatory region 246622	within coordinates
Snord95	small nucleolar RNA, C/D box 95	694 bp upstream
Snord96a	small nucleolar RNA, C/D box 96A	336 bp downstream
Tssr101141	transcription start site region 101141	1577 bp downstream
Tssr101142	transcription start site region 101142	636 bp downstream
Tssr101143	transcription start site region 101143	149 bp downstream
Tssr101144	transcription start site region 101144	93 bp downstream
Tssr101145	transcription start site region 101145	977 bp upstream