rs26974861 SNP Detail

Summary

• ID
  rs26974861
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:48693050 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAATAGAGG ATCCTAGTGA
  TGACAAGACG ACATTGTCAA CCAATCCCCC ACAAGGGAAT GAGGACATGT CCTGCAATTC
  TGAATGGGTT CTCTGATACA TGTCAGACAT GACATAGGCT AGTAGTAGGT TCTAAGCCAC
  GTGTGGACTG TGTGGGGTAA TAGAGCCTAC GGGGCAAGGA TGAAGCTAGG AAAAGGCTCT
  R
  GCTGGATGGA CAAAACCTGT CTAGAAAGTG ACCAGGTTCT CCTTCTTAGG GGCACCACCA
  CAAGGCGATT TGTCGGCCAC ACCAAGGATG TGTTGAGCGT GGCCTTCTCC TCTGACAACC
  GGCAGATTGT CTCTGGGTCC CGAGACAAGA CCATAAAGTT ATGGAATACT CTGGGTGTCT
  GCAAGTACAC GGTCCAGGTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37219193	NES08451722	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26974861					SNP	A	A	A	A	A	A	A	A	A	A	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37219193	NES08451722	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:48693050 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2778	CpG island 2778	1341 bp distal
Gm25296	predicted gene, 25296	1291 bp downstream
Rack1	receptor for activated C kinase 1	within coordinates
Rr246622	regulatory region 246622	within coordinates
Snord95	small nucleolar RNA, C/D box 95	916 bp upstream
Snord96a	small nucleolar RNA, C/D box 96A	114 bp downstream
Tssr101139	transcription start site region 101139	1854 bp downstream
Tssr101140	transcription start site region 101140	1830 bp downstream
Tssr101141	transcription start site region 101141	1355 bp downstream
Tssr101142	transcription start site region 101142	414 bp downstream
Tssr101143	transcription start site region 101143	43 bp upstream
Tssr101144	transcription start site region 101144	86 bp upstream
Tssr101145	transcription start site region 101145	1199 bp upstream