rs26974863 SNP Detail

Summary

• ID
  rs26974863
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:48692021 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCCGGACT TGATTGTCCC
  GCCCTAGGTT TTCTTGTAAC TAATGATTTT TTTTCTTTAA TGATGTATCT TCATGTGTAT
  TTCCTCCCTA CCCACCCCAA AATTATGCTC ATTTTCTCTC CTACCTAATA CTAGGCTTAT
  TATTGTCCGT TTCTGTGTAA GTTGGTTCGT GGCTAGGATT GTGTCTGATG CTACAATAAC
  K
  GCTGCATTTA TTTCAGTAAC TCTCAGGCGG GAAAGGCTGT CTCTGCTCAG CCTACATACA
  CCCAAGTGGT GCTTCTGCTG TTAATTAGTC TCGGGCCCGG ACGATGACTA AGGTTAGGGT
  TAGTTTCCCA GACCCTGCAT GGTAGCTTGC AGTCATCTGA AACTAGTTCC AGGAGACCTG
  ACACGCACTT CTGAACACCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37219197	NES08451760	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	T	G	T	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26974863					SNP	G	G	G	G	G	G	G	G	G	G	T	G	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37219197	NES08451760	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:48692021 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2778	CpG island 2778	312 bp distal
Gm25296	predicted gene, 25296	262 bp downstream
Gm36109	predicted gene, 36109	1791 bp upstream
Rack1	receptor for activated C kinase 1	within coordinates
Rr246622	regulatory region 246622	within coordinates
Snord95	small nucleolar RNA, C/D box 95	1945 bp upstream
Snord96a	small nucleolar RNA, C/D box 96A	839 bp upstream
Tssr101138	transcription start site region 101138	1123 bp downstream
Tssr101139	transcription start site region 101139	825 bp downstream
Tssr101140	transcription start site region 101140	801 bp downstream
Tssr101141	transcription start site region 101141	326 bp downstream
Tssr101142	transcription start site region 101142	605 bp upstream
Tssr101143	transcription start site region 101143	1072 bp upstream
Tssr101144	transcription start site region 101144	1115 bp upstream
Tssr107634	transcription start site region 107634	1789 bp upstream
Tssr107635	transcription start site region 107635	1189 bp upstream