rs26974864 SNP Detail

Summary

• ID
  rs26974864
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:48691760 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACACATGAA CGGAAACCGA
  GACACGTCGC GCAACTGTAC TCACACCCCA CCTCCCAAAG TTGGCGATTT TAAATCTCTC
  GCTTGCTTCC TGGAGATGTG TTTAAGTAGT TTTACGGGGC TACAAGACGG GCGGAGCAAT
  GATGACCCCA ACATGCCATC TGAGTGGCTT TGCTGAAATC CAGAGGCTGT TTCTGAGCTG
  Y
  TGTCGCCTGG CCCTAAACTA TAGACAGTGG GTAAACTTTG TAGATGCCTT GTTCCCCACA
  TTTCCGGACT TGATTGTCCC GCCCTAGGTT TTCTTGTAAC TAATGATTTT TTTTCTTTAA
  TGATGTATCT TCATGTGTAT TTCCTCCCTA CCCACCCCAA AATTATGCTC ATTTTCTCTC
  CTACCTAATA CTAGGCTTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37219198	NES08451759	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26974864					SNP	T	T	T	T	T	T	C	T	T	T	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37219198	NES08451759	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:48691760 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2778	CpG island 2778	51 bp distal
Gm25296	predicted gene, 25296	1 bp downstream
Gm36109	predicted gene, 36109	1530 bp upstream
Rack1	receptor for activated C kinase 1	within coordinates
Rr246622	regulatory region 246622	within coordinates
Snord96a	small nucleolar RNA, C/D box 96A	1100 bp upstream
Tssr101138	transcription start site region 101138	862 bp downstream
Tssr101139	transcription start site region 101139	564 bp downstream
Tssr101140	transcription start site region 101140	540 bp downstream
Tssr101141	transcription start site region 101141	65 bp downstream
Tssr101142	transcription start site region 101142	866 bp upstream
Tssr101143	transcription start site region 101143	1333 bp upstream
Tssr101144	transcription start site region 101144	1376 bp upstream
Tssr107634	transcription start site region 107634	1528 bp upstream
Tssr107635	transcription start site region 107635	928 bp upstream