rs26974866 SNP Detail

Summary

• ID
  rs26974866
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:48690989 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCACGTAAGG GCGGAGAGGC CACTGTAGTT TGCTTGTGTG
  CCCTCAGCCC CACTTCTGCT TCCACGGCAT GCTTTAATCT CCCGAGAAGC CTTTCTAAAA
  M
  CCTGGCGCAT CTGGCTTCAG AATGCATTTG TACAGCGCTG CCAAACTAGG TTGCGTGGCA
  GAAGAAACGA CGATACTTGA GACCTACTCT CCCAGTTCCT                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37219201	NES08451756	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	A	C	A	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26974866					SNP	C	C	C	C	C	C	C	C	C	C	A	C	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37219201	NES08451756	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:48690989 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2778	CpG island 2778	within coordinates
Gm25296	predicted gene, 25296	704 bp upstream
Gm36109	predicted gene, 36109	759 bp upstream
Rack1	receptor for activated C kinase 1	198 bp upstream
Rr246622	regulatory region 246622	within coordinates
Snord96a	small nucleolar RNA, C/D box 96A	1871 bp upstream
Tssr101138	transcription start site region 101138	91 bp downstream
Tssr101139	transcription start site region 101139	195 bp upstream
Tssr101140	transcription start site region 101140	229 bp upstream
Tssr101141	transcription start site region 101141	702 bp upstream
Tssr101142	transcription start site region 101142	1637 bp upstream
Tssr107634	transcription start site region 107634	757 bp upstream
Tssr107635	transcription start site region 107635	157 bp upstream