rs26974868 SNP Detail

Summary

• ID
  rs26974868
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:48690547 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATCACAAGC GCACTCACAC
  ACAAATACTT TAAAACATAC AGTTAAAACT TTTTAAGGCC AGATCTGTGA CATTTGGAAA
  CACTACAAAA TTTGAACACG TGTTGAGGTC ATCGGGTTGC CAGGCTATCC GTGTTCCTCT
  GCTTCCCCGT CCGGGAACAC TTCTTTCAGG GCAGCACAAG ACAGACCAGC AGGCTTTTCT
  K
  GGGAATGATC AGAGGCACAG AAAGGGCTTC CAACAGAATC CCCAGAAATC TGAACCCAGC
  ACTTCCTCCT TTATAGCCTC GCCGGGCGGC GGCTCGGTTT ATAATTCCAG TACTTGGGAG
  ACAGAAGCAG GTCGGTAGTT CAAAACCATC CTTGGCAACA CAACCAGTTT AAGACTAGCC
  TTCGCTACAT GAAATTTTGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37219203	NES08451796	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26974868					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37219203	NES08451796	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:48690547 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2778	CpG island 2778	235 bp proximal
Gm25296	predicted gene, 25296	1146 bp upstream
Gm36109	predicted gene, 36109	317 bp upstream
Rack1	receptor for activated C kinase 1	640 bp upstream
Rr246622	regulatory region 246622	within coordinates
Tssr101138	transcription start site region 101138	321 bp upstream
Tssr101139	transcription start site region 101139	637 bp upstream
Tssr101140	transcription start site region 101140	671 bp upstream
Tssr101141	transcription start site region 101141	1144 bp upstream
Tssr107634	transcription start site region 107634	315 bp upstream
Tssr107635	transcription start site region 107635	238 bp downstream