rs26974869 SNP Detail

Summary

• ID
  rs26974869
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:48690476 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACAAATCG GCTGTAGCCA
  AACACACATG GCAGGAGAGA AAATTCCTGA CTTCAGCCAG TGCTCTGTGG CAATCACAAG
  CGCACTCACA CACAAATACT TTAAAACATA CAGTTAAAAC TTTTTAAGGC CAGATCTGTG
  ACATTTGGAA ACACTACAAA ATTTGAACAC GTGTTGAGGT CATCGGGTTG CCAGGCTATC
  M
  GTGTTCCTCT GCTTCCCCGT CCGGGAACAC TTCTTTCAGG GCAGCACAAG ACAGACCAGC
  AGGCTTTTCT GGGGAATGAT CAGAGGCACA GAAAGGGCTT CCAACAGAAT CCCCAGAAAT
  CTGAACCCAG CACTTCCTCC TTTATAGCCT CGCCGGGCGG CGGCTCGGTT TATAATTCCA
  GTACTTGGGA GACAGAAGCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37219204	NES08451795	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs26974869					SNP	C	C	C	C	C	C	A	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37219204	NES08451795	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:48690476 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2778	CpG island 2778	306 bp proximal
Gm25296	predicted gene, 25296	1217 bp upstream
Gm36109	predicted gene, 36109	246 bp upstream
Rack1	receptor for activated C kinase 1	711 bp upstream
Rr246622	regulatory region 246622	within coordinates
Tssr101138	transcription start site region 101138	392 bp upstream
Tssr101139	transcription start site region 101139	708 bp upstream
Tssr101140	transcription start site region 101140	742 bp upstream
Tssr101141	transcription start site region 101141	1215 bp upstream
Tssr107634	transcription start site region 107634	244 bp upstream
Tssr107635	transcription start site region 107635	309 bp downstream