rs26977576 SNP Detail

Summary

• ID
  rs26977576
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:52170807 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAAGGCCAA TAGGCAGGGA
  TGACCGGCAT ATTGCCTGTC TTTCTACAGA GGAAGTGTGG GAGAGGCTCA GCTTGGGCAA
  GAGATTCCCT GCACCCAAGG TCCTTGCAAG ACACTCCTTA CCTGTTAAGA GAATGAGGGT
  GTCGTTCCCA GGACCACGTG TGAGCCTTGA AGTCAGGTGA CAATGTGCTC CCCACAAACA
  Y
  GGGATGACCC AACTTTGCTT TGTAAAACCA AACTATCTTC GGAACACCCA CAGTCCTTCA
  TGAGTTGCCA GCTACTTTTA CTTTTTTGAC CTTTATTTGC TGCGCGGTCT CTCAGGTTTG
  CTAGAGACTC TCTCTTGGGC CAGGAAGACG GCATAGCAGC TAAACCGACT TGTGCAAGCC
  TGATGGTGAG TTCCAGCCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ
ss37212208	NES08446306	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ
rs26977576					SNP	T	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37212208	NES08446306	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:52170807 () rs orientation: forward

Symbol	Name	Function Class
A630014C17Rik	RIKEN cDNA A630014C17 gene	within coordinates
Rr386072	regulatory region 386072	1948 bp downstream
Tcf7	transcription factor 7, T cell specific	within coordinates
Tssr101334	transcription start site region 101334	21 bp upstream
Tssr107875	transcription start site region 107875	869 bp upstream
Tssr107876	transcription start site region 107876	227 bp downstream
Tssr107877	transcription start site region 107877	259 bp downstream
Tssr107878	transcription start site region 107878	1796 bp downstream
Tssr107879	transcription start site region 107879	1853 bp downstream